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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27754423_27764009_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27754423 - 27764009
Intron Length:
9587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TAATTATTCATT
Flanking Amino Acid:
MWRIPPDPEAGGIGRVVNGA
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.5
0.62
0.8
70.5
36.3
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
49.2
0.02
2
70.77
40.2

Associated Gene:

Gene:
DCAF5
Ensembl Gene ID:
ENSAPLG00000003114
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022162
27746089 - 27814536
68448
ENSAPLT00000021975
27746089 - 27807588
61500
ENSAPLT00000003171
27746089 - 27808316
62228