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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27778053_27794082_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27778053 - 27794082
Intron Length:
16030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCTGACATATTT
Flanking Amino Acid:
VGLWDIRKPQSSLLRYGGNL
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
83.6
0.75
0.8
76.4
37.6
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
45
-0.3
2.1
65.44
45.3

Associated Gene:

Gene:
DCAF5
Ensembl Gene ID:
ENSAPLG00000003114
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022162
27746089 - 27814536
68448
ENSAPLT00000021975
27746089 - 27807588
61500
ENSAPLT00000003171
27746089 - 27808316
62228