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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27798721_27800144_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27798721 - 27800144
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGATAAT
U12 Branch Point Sequence:
GGAAGGATAATA
Flanking Amino Acid:
DEQVILHDVESTETLDVFAH
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
36.9
Major BPS
54.9
0.12
1.4
58
45.4
Major PPT
85
0.79
0.8
76.9
37.4
Minor 5ss
35.4
-1.7
2.7
43.2
43.8
Minor BPS
36.4
-1
2.3
43.58
38

Associated Gene:

Gene:
DCAF5
Ensembl Gene ID:
ENSAPLG00000003114
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022162
27746089 - 27814536
68448
ENSAPLT00000021975
27746089 - 27807588
61500
ENSAPLT00000003171
27746089 - 27808316
62228