About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27804200_27807487_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27804200 - 27807487
Intron Length:
3288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCTCTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
AGTAAGTCAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
81.1
0.7
0.7
74.1
31.1
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
38.8
-0.7
2.4
57.48
44.5

Associated Gene:

Gene:
DCAF5
Ensembl Gene ID:
ENSAPLG00000003114
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021975
27746089 - 27807588
61500