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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27804200_27808297_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27804200 - 27808297
Intron Length:
4098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
AGTAAGTCAAGT
Flanking Amino Acid:
MEAFFLGGDDRRVLLW
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
81.1
0.7
0.7
74.1
31.1
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
38.8
-0.7
2.4
57.48
44.5

Associated Gene:

Gene:
DCAF5
Ensembl Gene ID:
ENSAPLG00000003114
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003171
27746089 - 27808316
62228