Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27815301_27815340_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

27815301 - 27815340

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-GG

5'SS Sequence:

CTG|GCTGGCCAG

5'SS Class:

weak_major

3'SS Sequence:

GAGGGGAGCAGGG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCTGAG

U12 Branch Point Sequence:

CCCTCCTGAGGG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.6

0.21

1.3

41.3

45.1

Major BPS

54.8

0.12

1.6

53.3

44.2

Major PPT

20.4

-1.7

3.1

15.7

28.7

Minor 5ss

-3.2

3.8

27.2

37.7

Minor BPS

43.3

-0.6

43.42

Associated Gene:

Gene:

EXD2

Ensembl Gene ID:

ENSAPLG00000003322

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003401

27815261 - 27831288

16028