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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27815425_27815518_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27815425 - 27815518
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATTA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAA
U12 Branch Point Sequence:
TTCTCTTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
76.3
28.1
Major BPS
48.1
-0.1
0.9
53.4
30.8
Major PPT
87.1
0.83
0.7
83
25.6
Minor 5ss
35.4
-1.7
3.2
46.9
48.4
Minor BPS
68.9
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
EXD2
Ensembl Gene ID:
ENSAPLG00000003322
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003401
27815261 - 27831288
16028