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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27822625_27822732_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27822625 - 27822732
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGCG
5'SS Class:
major
3'SS Sequence:
TTTCTCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
TGATCGCCACCT
Flanking Amino Acid:
SPPPAAEPPQAAIKRRAGAG
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
55
41.5
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
85.5
0.8
0.7
81
24.1
Minor 5ss
33.7
-1.9
3.8
47.1
48.5
Minor BPS
39.7
-0.7
2.5
62.85
46.4

Associated Gene:

Gene:
EXD2
Ensembl Gene ID:
ENSAPLG00000003322
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044060
27822334 - 27831288
8955