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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27824244_27825362_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
27824244 - 27825362
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
GTTAAAACTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTTGTTAAAA
Flanking Amino Acid:
VDLRYLAMRQRKDLLHNCLS
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
67.4
44
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
54.1
0.09
1.2
51.3
41.7
Minor 5ss
42.9
-0.8
3.1
60.8
43.7
Minor BPS
56.8
0.21
2.1
71.75
40.6

Associated Gene:

Gene:
EXD2
Ensembl Gene ID:
ENSAPLG00000003322
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044060
27822334 - 27831288
8955
ENSAPLT00000040280
27822334 - 27831339
9006
ENSAPLT00000003401
27815261 - 27831288
16028