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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27828576_27828769_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27828576 - 27828769
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TGTACTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
CTGTCTTGAATA
Flanking Amino Acid:
AQWYLDKGIGDLVSTDPFVV
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
81.1
0.7
0.9
77.5
36.7
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
62.5
0.39
1.4
67.54
39.7

Associated Gene:

Gene:
EXD2
Ensembl Gene ID:
ENSAPLG00000003322
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044060
27822334 - 27831288
8955
ENSAPLT00000040280
27822334 - 27831339
9006
ENSAPLT00000003401
27815261 - 27831288
16028