Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27829916_27831071_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27829916 - 27831071

Intron Length:

1156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAACAA

5'SS Class:

major

3'SS Sequence:

TTTGTCCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

TGAAAATAAACT

Flanking Amino Acid:

MLQEAAALETRICNESYMPH

Intron Amino Acid Position:

570

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

62.9

37.1

Major BPS

0.3

62.3

30.4

Major PPT

77.2

0.61

73.7

36.9

Minor 5ss

36.7

-1.5

3.1

47.2

48.2

Minor BPS

45.5

-0.2

2.1

65.22

44.1

Associated Gene:

Gene:

EXD2

Ensembl Gene ID:

ENSAPLG00000003322

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044060

27822334 - 27831288

8955

ENSAPLT00000040280

27822334 - 27831339

9006

ENSAPLT00000003401

27815261 - 27831288

16028