Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27851523_27880599_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27851523 - 27880599

Intron Length:

29077

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

ATCTCTGCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

TGATGCTTATCT

Flanking Amino Acid:

RREDGSLPLAMTRAPQGEKN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.9

0.31

1.3

54.4

44.7

Major BPS

0.72

38.9

Major PPT

0.56

0.9

65.9

40.3

Minor 5ss

28.5

-2.5

3.1

35.7

41.3

Minor BPS

58.1

0.33

2.1

77.74

44.2

Associated Gene:

Gene:

GALNT16

Ensembl Gene ID:

ENSAPLG00000003541

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043522

27851352 - 27914766

63415

ENSAPLT00000033161

27851352 - 27910936

59585

ENSAPLT00000003643

27851352 - 27914766

63415