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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27880776_27883297_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27880776 - 27883297
Intron Length:
2522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
TTTGGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGACAA
U12 Branch Point Sequence:
TTGGGCTCACAC
Flanking Amino Acid:
DRPIRDTRHYRCTSVRYDPD
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
50.6
0.02
1.2
59
38
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
40.1
-0.7
2.2
51.29
45.6

Associated Gene:

Gene:
GALNT16
Ensembl Gene ID:
ENSAPLG00000003541
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043522
27851352 - 27914766
63415
ENSAPLT00000033161
27851352 - 27910936
59585
ENSAPLT00000003643
27851352 - 27914766
63415