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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27883397_27887324_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27883397 - 27887324
Intron Length:
3928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGGATCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CCTCTCTGGATC
Flanking Amino Acid:
ARSTLLRTVKSVLNRTPPSL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
70.5
0.46
1
62.8
39.5
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
48.5
-0.1
1.4
54.77
37.9

Associated Gene:

Gene:
GALNT16
Ensembl Gene ID:
ENSAPLG00000003541
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043522
27851352 - 27914766
63415
ENSAPLT00000033161
27851352 - 27910936
59585
ENSAPLT00000003643
27851352 - 27914766
63415