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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27889385_27890458_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27889385 - 27890458
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCATCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCTTCCTAACCT
Flanking Amino Acid:
VKCLRNTRREGLIRSRVRGA
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.7
0.56
0.8
69.1
29.8
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
56.7
0.29
2
75
47.8

Associated Gene:

Gene:
GALNT16
Ensembl Gene ID:
ENSAPLG00000003541
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003643
27851352 - 27914766
63415
ENSAPLT00000043522
27851352 - 27914766
63415
ENSAPLT00000033161
27851352 - 27910936
59585