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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27890581_27892197_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27890581 - 27892197
Intron Length:
1617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTATCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
CTTTCTCTATCT
Flanking Amino Acid:
LQPMLQRVKEDYTRVVSPII
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
80.6
0.69
0.8
77.7
30.8
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
57.7
0.32
2
80.25
42

Associated Gene:

Gene:
GALNT16
Ensembl Gene ID:
ENSAPLG00000003541
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033161
27851352 - 27910936
59585
ENSAPLT00000003643
27851352 - 27914766
63415
ENSAPLT00000043522
27851352 - 27914766
63415