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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27894988_27899503_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27894988 - 27899503
Intron Length:
4516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
GGGTTTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAC
U12 Branch Point Sequence:
AGCTGTATAACT
Flanking Amino Acid:
QMDIWGGENFELSFRVWMCG
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
76.8
34.8
Major BPS
60.2
0.25
1.3
64
39.8
Major PPT
75.5
0.57
1
65.9
45.3
Minor 5ss
47.6
-0.2
2.8
61.3
44.6
Minor BPS
48.7
-0
2
67.74
43.1

Associated Gene:

Gene:
GALNT16
Ensembl Gene ID:
ENSAPLG00000003541
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043522
27851352 - 27914766
63415
ENSAPLT00000033161
27851352 - 27910936
59585
ENSAPLT00000003643
27851352 - 27914766
63415