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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27900411_27901430_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27900411 - 27901430
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTATCTACAACA
Flanking Amino Acid:
RPSAIGKSFGSVAERVEQRR
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
77.7
0.62
0.9
68.3
42.2
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
58
0.25
1.8
73.79
37.5

Associated Gene:

Gene:
GALNT16
Ensembl Gene ID:
ENSAPLG00000003541
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043522
27851352 - 27914766
63415
ENSAPLT00000033161
27851352 - 27910936
59585
ENSAPLT00000003643
27851352 - 27914766
63415