Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27904065_27911647_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27904065 - 27911647

Intron Length:

7583

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGCA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAC

U12 Branch Point Sequence:

TCTCTCCTCACA

Flanking Amino Acid:

EACNQKDGRQKWKMKGSFIQ

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

1.1

35.3

Major BPS

54.4

0.11

1.2

36.4

Major PPT

81.6

0.71

0.7

75.9

26.3

Minor 5ss

38.5

-1.3

3.1

50.7

45.7

Minor BPS

48.3

-0.1

2.1

64.87

41.6

Associated Gene:

Gene:

GALNT16

Ensembl Gene ID:

ENSAPLG00000003541

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043522

27851352 - 27914766

63415

ENSAPLT00000003643

27851352 - 27914766

63415