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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27931601_27932233_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27931601 - 27932233
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CTTTTTAAGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTTTTTAAGC
Flanking Amino Acid:
IDDLADLSCLVEHLAWTFLQ
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
70.6
36.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
71.8
0.49
1.1
66.8
43
Minor 5ss
42.5
-0.8
2.7
51.5
44.9
Minor BPS
58.6
0.25
1.7
64.58
42.1

Associated Gene:

Gene:
ERH
Ensembl Gene ID:
ENSAPLG00000030705
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018827
27931345 - 27937063
5719