About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27932355_27933536_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27932355 - 27933536
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTGCATTATTC
Flanking Amino Acid:
DYESVNECMEGVCKMYEEHL
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69.9
0.45
0.7
61.2
29.2
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
50.1
-0
1.9
65.76
40.1

Associated Gene:

Gene:
ERH
Ensembl Gene ID:
ENSAPLG00000030705
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018827
27931345 - 27937063
5719