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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27933625_27936651_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27933625 - 27936651
Intron Length:
3027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAAAAAAT
Flanking Amino Acid:
MSHTILLVQPT
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
55.8
43.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
30.4
-2.2
3.3
34.5
43.8
Minor BPS
42.3
-0.5
2.4
71.49
44.8

Associated Gene:

Gene:
ERH
Ensembl Gene ID:
ENSAPLG00000030705
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018827
27931345 - 27937063
5719