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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27937180_27940829_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27937180 - 27940829
Intron Length:
3650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTCTTAAAG
Flanking Amino Acid:
IIPLAVNFSEERLKLVTVLG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
100
1.24
0.5
100
0
Major PPT
79.3
0.66
0.9
72.9
37.4
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
65.8
0.36
1.5
65.06
42.6

Associated Gene:

Gene:
SLC39A9
Ensembl Gene ID:
ENSAPLG00000004045
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004162
27936132 - 27952120
15989
ENSAPLT00000045513
27937084 - 27956188
19105
ENSAPLT00000036989
27937084 - 27955451
18368