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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27940939_27945388_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27940939 - 27945388
Intron Length:
4450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGTCTCCTAATC
Flanking Amino Acid:
VHALYEDILEGKHRPVSEMQ
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.5
37.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
67.8
0.4
1
61
40.2
Minor 5ss
34.3
-1.8
2.9
37.3
39.7
Minor BPS
57.9
0.23
1.7
69.18
35.9

Associated Gene:

Gene:
SLC39A9
Ensembl Gene ID:
ENSAPLG00000004045
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045513
27937084 - 27956188
19105
ENSAPLT00000036989
27937084 - 27955451
18368
ENSAPLT00000004162
27936132 - 27952120
15989