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Intron Name: Anas_platyrhynchos_platyrhynchos_5_27945581_27947530_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27945581 - 27947530

Intron Length:

1950

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

ATGACCGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTCTCATTATGT

Flanking Amino Acid:

IGSSHVHSTDDPEAARSGNS

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

79.8

35.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

67.6

0.4

62.5

43.6

Minor 5ss

35.2

-1.7

2.7

39.5

40.9

Minor BPS

52.1

0.15

2.2

76.82

45.6

Associated Gene:

Gene:

SLC39A9

Ensembl Gene ID:

ENSAPLG00000004045

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004162

27936132 - 27952120

15989

ENSAPLT00000045513

27937084 - 27956188

19105

ENSAPLT00000036989

27937084 - 27955451

18368