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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27951316_27951604_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27951316 - 27951604
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
SMVTYLGLSKSSKEALSEVN
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.8
0.69
0.8
75.3
32.8
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
SLC39A9
Ensembl Gene ID:
ENSAPLG00000004045
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036989
27937084 - 27955451
18368
ENSAPLT00000004162
27936132 - 27952120
15989
ENSAPLT00000045513
27937084 - 27956188
19105