Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27964730_27970265_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27964730 - 27970265

Intron Length:

5536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCAGAA

U12 Branch Point Sequence:

TCTAGCAGAATT

Flanking Amino Acid:

FGRQSAKWSRRFFIIKESFL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

73.2

39.3

Major BPS

46.4

-0.2

38.4

32.3

Major PPT

85.7

0.8

79.8

32.3

Minor 5ss

44.2

-0.6

2.9

59.3

45.5

Minor BPS

45.2

-0.2

2.1

66.49

44.2

Associated Gene:

Gene:

PLEKHD1

Ensembl Gene ID:

ENSAPLG00000004134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004227

27964338 - 27984831

20494