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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27970360_27970737_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27970360 - 27970737
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GGTTCATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
ACTTTGCTGACT
Flanking Amino Acid:
SNKYFNIHPKGVIPLGGCIV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
73.3
0.53
1
62.9
43.2
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
46.6
-0.1
2.3
69.34
41.9

Associated Gene:

Gene:
PLEKHD1
Ensembl Gene ID:
ENSAPLG00000004134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004227
27964338 - 27984831
20494