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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27970828_27971326_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27970828 - 27971326
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GTTTCTTTCCCC
Flanking Amino Acid:
AIKISHEDFHGNIVLAAESE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
78
38.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
84.7
0.78
0.7
76.7
32
Minor 5ss
36.5
-1.5
2.7
41.6
38.2
Minor BPS
44
-0.4
3.6
70.5
41.3

Associated Gene:

Gene:
PLEKHD1
Ensembl Gene ID:
ENSAPLG00000004134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004227
27964338 - 27984831
20494