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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27971404_27974704_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27971404 - 27974704
Intron Length:
3301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
CTGCTCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CTCTCTTTACCG
Flanking Amino Acid:
WLEMLQESGKVTWKNAQLGE
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
57
43.3
Major BPS
74
0.6
1
65.6
41.1
Major PPT
74
0.54
0.8
66
35.9
Minor 5ss
46.2
-0.4
2.8
59.8
45
Minor BPS
59.2
0.15
1.8
62.23
46.2

Associated Gene:

Gene:
PLEKHD1
Ensembl Gene ID:
ENSAPLG00000004134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004227
27964338 - 27984831
20494