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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27974797_27976932_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27974797 - 27976932
Intron Length:
2136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTC
U12 Branch Point Sequence:
TTCTCTGTGTTT
Flanking Amino Acid:
QLAKEKQEYLDKLMEETEEL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
35.6
-0.9
4.2
77.4
37.4
Major PPT
85.9
0.81
0.8
80.6
37
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
38.5
-0.8
3.7
69.71
42.6

Associated Gene:

Gene:
PLEKHD1
Ensembl Gene ID:
ENSAPLG00000004134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004227
27964338 - 27984831
20494