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Intron Name: Anas_platyrhynchos_platyrhynchos_5_27978964_27979769_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27978964 - 27979769

Intron Length:

806

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGGGAG

5'SS Class:

major

3'SS Sequence:

TCTGCTTCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

TTCCCCTGCAAT

Flanking Amino Acid:

ELRLEQEQIKRELELTARSL

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

64.3

41.8

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

79.3

0.66

0.8

77.4

31.3

Minor 5ss

-2.4

3.5

38.1

46.8

Minor BPS

48.6

-0

2.1

71.81

44.5

Associated Gene:

Gene:

PLEKHD1

Ensembl Gene ID:

ENSAPLG00000004134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004227

27964338 - 27984831

20494