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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27982496_27984368_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27982496 - 27984368
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GTGTCATTCATT
Flanking Amino Acid:
KMKADVSHLRRFFEECIRNA
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
75.6
0.58
0.8
72.9
31.9
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
53
0.17
2
73.76
43.2

Associated Gene:

Gene:
PLEKHD1
Ensembl Gene ID:
ENSAPLG00000004134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004227
27964338 - 27984831
20494