Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_27984519_27984670_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27984519 - 27984670

Intron Length:

152

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAGGTACC

5'SS Class:

major

3'SS Sequence:

GCTCTTGTTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

GCGTGCTGACCT

Flanking Amino Acid:

RRRTSTSWNDLKQSQSFMFS

Intron Amino Acid Position:

451

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.2

63.1

41.5

Major BPS

66.3

0.4

1.1

41.8

Major PPT

79.3

0.66

0.9

76.2

37.8

Minor 5ss

38.5

-1.3

3.1

56.2

41.1

Minor BPS

45.3

-0.2

2.1

61.1

48.2

Associated Gene:

Gene:

PLEKHD1

Ensembl Gene ID:

ENSAPLG00000004134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004227

27964338 - 27984831

20494