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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2801803_2802910_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2801803 - 2802910
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTTTTTGATA
Flanking Amino Acid:
RGGESFIGKLRSNLMGTKFT
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
78.8
0.65
0.9
77
36.7
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
69.8
0.62
1
75.26
29.2

Associated Gene:

Gene:
TUB
Ensembl Gene ID:
ENSAPLG00000013637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017248
2795193 - 2908014
112822
ENSAPLT00000014251
2794936 - 2914004
119069
ENSAPLT00000038374
2794936 - 2914004
119069
ENSAPLT00000038284
2794936 - 2914004
119069
ENSAPLT00000035884
2795193 - 2860153
64961