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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2803765_2804621_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2803765 - 2804621
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
GAAACCTGAGTT
Flanking Amino Acid:
GSATSKKSNKEAASAPSPST
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
82.1
0.72
0.8
80.8
31.3
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
47.8
-0
1.7
61.33
41.7

Associated Gene:

Gene:
TUB
Ensembl Gene ID:
ENSAPLG00000013637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014251
2794936 - 2914004
119069
ENSAPLT00000038374
2794936 - 2914004
119069
ENSAPLT00000038284
2794936 - 2914004
119069
ENSAPLT00000035884
2795193 - 2860153
64961
ENSAPLT00000017248
2795193 - 2908014
112822