About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2804744_2805645_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2804744 - 2805645
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAGTATTTCATA
Flanking Amino Acid:
SSLVALDHVPGISSSMNFDE
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.5
0.66
0.8
77
31.7
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
48.5
-0.1
1.9
60.92
39.7

Associated Gene:

Gene:
TUB
Ensembl Gene ID:
ENSAPLG00000013637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038284
2794936 - 2914004
119069
ENSAPLT00000035884
2795193 - 2860153
64961
ENSAPLT00000017248
2795193 - 2908014
112822
ENSAPLT00000038374
2794936 - 2914004
119069