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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2804744_2808753_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2804744 - 2808753
Intron Length:
4010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAGTATTTCATA
Flanking Amino Acid:
QDLRTAMQKKGISSSMNFDE
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.5
0.66
0.8
77
31.7
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
48.5
-0.1
1.9
60.92
39.7

Associated Gene:

Gene:
TUB
Ensembl Gene ID:
ENSAPLG00000013637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014251
2794936 - 2914004
119069