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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28048018_28052376_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28048018 - 28052376
Intron Length:
4359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATCCTTAATT
Flanking Amino Acid:
GTCVLEAQATGWLSKSKGPT
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
80
0.75
1
78.6
31
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
85
1.18
1
90.45
32.9

Associated Gene:

Gene:
SUSD6
Ensembl Gene ID:
ENSAPLG00000014619
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015244
28014647 - 28090216
75570