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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28048018_28081910_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28048018 - 28081910
Intron Length:
33893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCTGAGATAACC
Flanking Amino Acid:
GTCVLEAQATDCPQPPQPEN
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
43.4
-0.5
2.4
60.01
45.1

Associated Gene:

Gene:
SUSD6
Ensembl Gene ID:
ENSAPLG00000014619
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023953
28014647 - 28090216
75570