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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2805718_2808753_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2805718 - 2808753
Intron Length:
3036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAA
U12 Branch Point Sequence:
GTTTGCAGAATC
Flanking Amino Acid:
QDLRTAMQKKDPHANTSWSS
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
53.5
0.09
1.2
58
38.9
Major PPT
87
0.83
0.7
80.3
31.6
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
47.7
-0.1
2.1
65.2
40.2

Associated Gene:

Gene:
TUB
Ensembl Gene ID:
ENSAPLG00000013637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017248
2795193 - 2908014
112822
ENSAPLT00000038374
2794936 - 2914004
119069
ENSAPLT00000038284
2794936 - 2914004
119069
ENSAPLT00000035884
2795193 - 2860153
64961