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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28106146_28106483_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28106146 - 28106483
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATACTTAATT
Flanking Amino Acid:
FSSRRPRSDRSRSAPPVRTE
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.3
29.4
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.76
0.8
76.7
37.1
Minor 5ss
38.2
-1.3
3
51
45.5
Minor BPS
73.1
0.8
1.4
83.55
36.8

Associated Gene:

Gene:
SRSF5
Ensembl Gene ID:
ENSAPLG00000014681
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015316
28104999 - 28109316
4318