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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28107939_28108270_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28107939 - 28108270
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
TTCATTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCTTTTTCATT
Flanking Amino Acid:
ADAHRPKLNEGVVEFASYSD
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
67.1
44.6
Major BPS
100
1.24
0.5
100
0
Major PPT
81.2
0.7
0.8
76.6
32.1
Minor 5ss
42
-0.9
3.1
51.7
45
Minor BPS
54.4
0.22
1.7
69.97
42.5

Associated Gene:

Gene:
SRSF5
Ensembl Gene ID:
ENSAPLG00000014681
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015316
28104999 - 28109316
4318