About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28108382_28108514_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28108382 - 28108514
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CGCTGCTGACAC
Flanking Amino Acid:
IKLIEGSKRHSRSRSRSRSR
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
80.5
33.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
76.7
0.6
0.9
73.9
36.1
Minor 5ss
41.9
-0.9
3.1
56.7
47.6
Minor BPS
39.8
-0.7
2.1
44.75
43.2

Associated Gene:

Gene:
SRSF5
Ensembl Gene ID:
ENSAPLG00000014681
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015316
28104999 - 28109316
4318