Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28136547_28136968_F

Intron Information:

Intron Rank:

141871

Intron Class:

major

Intron Phase:

Intron Coordinates:

28136547 - 28136968

Intron Length:

422

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACCAA

5'SS Class:

major

3'SS Sequence:

GTTTGTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTCAA

U12 Branch Point Sequence:

GTTTGTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

67.5

39.6

Major BPS

61.8

0.29

1.1

63.4

35.6

Major PPT

0.81

0.8

79.9

37.7

Minor 5ss

36.5

-1.5

3.1

48.3

Minor BPS

55.3

0.16

2.1

71.79

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026369

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018817

28132189 - 28138209

6021