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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28187518_28194769_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28187518 - 28194769

Intron Length:

7252

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTTAT

U12 Branch Point Sequence:

TTATTTGCAATC

Flanking Amino Acid:

LSVTHRGRCKDAGQSKCRLE

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

72.4

39.5

Major BPS

73.5

0.58

1.2

63.7

43.9

Major PPT

84.7

0.78

0.7

80.7

24.5

Minor 5ss

30.7

-2.2

3.4

40.4

45.8

Minor BPS

46.9

-0.2

2.1

62.42

37.7

Associated Gene:

Gene:

SMOC1

Ensembl Gene ID:

ENSAPLG00000014966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033009

28149694 - 28267855

118162

ENSAPLT00000015613

28149694 - 28269750

120057