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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28194883_28203719_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28194883 - 28203719

Intron Length:

8837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTATCAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAA

U12 Branch Point Sequence:

TTTGTTTTATCA

Flanking Amino Acid:

ECNEDGSFTQVQCHTYTGYC

Intron Amino Acid Position:

138

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

72.3

37.6

Major BPS

0.72

80.3

31.7

Major PPT

74.7

0.56

38.6

Minor 5ss

35.9

-1.6

3.3

50.8

45.8

Minor BPS

61.3

0.35

1.7

74.08

38.4

Associated Gene:

Gene:

SMOC1

Ensembl Gene ID:

ENSAPLG00000014966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033009

28149694 - 28267855

118162

ENSAPLT00000015613

28149694 - 28269750

120057