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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28203820_28206075_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28203820 - 28206075

Intron Length:

2256

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTGG

5'SS Class:

major

3'SS Sequence:

TTTTCCTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTAAA

U12 Branch Point Sequence:

TTTTTCTTTCCT

Flanking Amino Acid:

SVQNKTPVCSGSVTDKPSGQ

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

54.3

45.2

Major BPS

63.9

0.35

63.9

30.3

Major PPT

86.8

0.83

0.6

85.9

Minor 5ss

35.1

-1.7

3.4

47.5

47.9

Minor BPS

47.9

-0

3.6

87.49

38.1

Associated Gene:

Gene:

SMOC1

Ensembl Gene ID:

ENSAPLG00000014966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033009

28149694 - 28267855

118162

ENSAPLT00000015613

28149694 - 28269750

120057