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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28206124_28225798_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28206124 - 28225798
Intron Length:
19675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACT
Flanking Amino Acid:
PSGQGNSGRKDDGSKPTPTM
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.9
0.47
1
67.4
37.5
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
82
1.08
1
90.89
33.1

Associated Gene:

Gene:
SMOC1
Ensembl Gene ID:
ENSAPLG00000014966
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033009
28149694 - 28267855
118162
ENSAPLT00000015613
28149694 - 28269750
120057