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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28225856_28230060_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28225856 - 28230060
Intron Length:
4205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ATTTCTTTAAGG
Flanking Amino Acid:
METQPIFDGEEITAPTLWIK
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
70
0.49
1.7
73.4
39.4

Associated Gene:

Gene:
SMOC1
Ensembl Gene ID:
ENSAPLG00000014966
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033009
28149694 - 28267855
118162
ENSAPLT00000015613
28149694 - 28269750
120057